SNP Report
Basic Infomation
| Name | rs1292060 dbSNP |
|---|---|
| Location | chr:17,57913849 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11079390 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11650106 | 0.85[JPT][hapmap] |
| rs12449331 | 0.80[ASN][1000 genomes] |
| rs1292032 | 0.81[JPT][hapmap] |
| rs1292061 | 0.81[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1292064 | 0.82[ASN][1000 genomes] |
| rs1292065 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1292068 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12938273 | 0.81[ASN][1000 genomes] |
| rs1295925 | 0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1295926 | 0.82[ASN][1000 genomes] |
| rs2063353 | 0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs2333563 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2333617 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2453913 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2482455 | 0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2645466 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2645477 | 0.81[CHD][hapmap];0.90[JPT][hapmap] |
| rs2645479 | 0.81[CHD][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2645483 | 0.95[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2645490 | 0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2665397 | 0.81[CHD][hapmap];0.85[JPT][hapmap] |
| rs2665404 | 0.81[CHD][hapmap];0.81[JPT][hapmap] |
| rs2777889 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2777895 | 0.80[ASN][1000 genomes] |
| rs2777898 | 0.90[JPT][hapmap] |
| rs2777899 | 0.90[JPT][hapmap] |
| rs4257266 | 0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4622571 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs57510610 | 0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6503939 | 0.80[ASN][1000 genomes] |
| rs7224006 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8067354 | 0.94[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs8070345 | 0.85[JPT][hapmap] |
| rs8081108 | 0.81[CHD][hapmap];0.85[JPT][hapmap] |
| rs8081395 | 0.81[CHD][hapmap];0.85[JPT][hapmap] |
| rs8081468 | 1.00[ASW][hapmap];0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9896742 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VMP1 | Proximal transcriptional regulation |
| MIR21 | Proximal transcriptional regulation |
| ENSG00000267637 | Distal transcriptional regulation |
| MAN1A2 | Distal transcriptional regulation |
| KIAA0040 | Distal transcriptional regulation |
| ENSG00000255432 | Distal transcriptional regulation |
| C11orf48 | Distal transcriptional regulation |
| METTL12 | Distal transcriptional regulation |
| SNORA57 | Distal transcriptional regulation |
| RPLP0 | Distal transcriptional regulation |
| PXN-AS1 | Distal transcriptional regulation |
| ENSG00000258738 | Distal transcriptional regulation |
| BAZ1A | Distal transcriptional regulation |
| SNRNP25 | Distal transcriptional regulation |
| FHOD1 | Distal transcriptional regulation |
| ZMYND8 | Distal transcriptional regulation |
| ENSG00000231119 | Distal transcriptional regulation |
| ID1 | Distal transcriptional regulation |
| EIF4A2 | Distal transcriptional regulation |
| ENSG00000263826 | Distal transcriptional regulation |
| SNORD2 | Distal transcriptional regulation |
| STARD7 | Distal transcriptional regulation |
| ENSG00000204685 | Distal transcriptional regulation |
| CBLB | Distal transcriptional regulation |
| ZZEF1 | Distal transcriptional regulation |
| CYB5D2 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| ENSG00000266826 | Distal transcriptional regulation |
| ENSG00000216168 | Distal transcriptional regulation |
| TRIM37 | Distal transcriptional regulation |
| ENSG00000263558 | Distal transcriptional regulation |
| ENSG00000224738 | Distal transcriptional regulation |
| CACNG4 | Distal transcriptional regulation |
| HEATR6 | Distal transcriptional regulation |
| ENSG00000267416 | Distal transcriptional regulation |
| TBX2 | Distal transcriptional regulation |
| ENSG00000267280 | Distal transcriptional regulation |
| C17orf82 | Distal transcriptional regulation |
| ENSG00000262413 | Distal transcriptional regulation |
| ARHGDIA | Distal transcriptional regulation |
| ENSG00000266402 | Distal transcriptional regulation |
| SNORD104 | Distal transcriptional regulation |
| SNORA76 | Distal transcriptional regulation |
| ENSG00000223764 | Distal transcriptional regulation |
| KRT80 | Distal transcriptional regulation |
| KRT8 | Distal transcriptional regulation |
| CYP20A1 | Distal transcriptional regulation |
| ZNF217 | Distal transcriptional regulation |
| ENSG00000265451 | Distal transcriptional regulation |
| CLASP1 | Distal transcriptional regulation |
| ENSG00000264229 | Distal transcriptional regulation |
| IPPK | Distal transcriptional regulation |
| TATDN1 | Distal transcriptional regulation |
| NDUFB9 | Distal transcriptional regulation |
| HIST1H2BC | Distal transcriptional regulation |
| ACAA1 | Distal transcriptional regulation |
| CEBPB | Distal transcriptional regulation |
| HIST1H2AI | Distal transcriptional regulation |
| HIST1H3H | Distal transcriptional regulation |
| CDK5 | Distal transcriptional regulation |
| SLC4A2 | Distal transcriptional regulation |
| PHPT1 | Distal transcriptional regulation |
| GPBP1 | Distal transcriptional regulation |
| MIR425 | Distal transcriptional regulation |
| NDUFAF3 | Distal transcriptional regulation |
| MIR191 | Distal transcriptional regulation |
| DALRD3 | Distal transcriptional regulation |
| GREB1 | Distal transcriptional regulation |
| MIR4429 | Distal transcriptional regulation |
| BRAT1 | Distal transcriptional regulation |
| MLPH | Distal transcriptional regulation |
| MBOAT2 | Distal transcriptional regulation |
| PTPN3 | Distal transcriptional regulation |
| CLTC | Distal transcriptional regulation |
| PPM1D | Distal transcriptional regulation |
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014