SNP Report
Basic Infomation
| Name | rs1295926 dbSNP |
|---|---|
| Location | chr:17,57909373 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11079390 | 0.82[ASN][1000 genomes] |
| rs11650106 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12449331 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1292044 | 0.85[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs1292060 | 0.82[ASN][1000 genomes] |
| rs1292061 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1292064 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1292065 | 0.83[ASN][1000 genomes] |
| rs1292069 | 0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1292071 | 0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12938273 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1295925 | 0.83[ASN][1000 genomes] |
| rs1295927 | 0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2063353 | 0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2150879 | 0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2333617 | 0.83[ASN][1000 genomes] |
| rs2526359 | 0.84[AMR][1000 genomes] |
| rs2645477 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2645479 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2645482 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2645485 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2665397 | 0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2665404 | 0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2665405 | 0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2777884 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2777885 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2777895 | 0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2777898 | 0.82[ASN][1000 genomes] |
| rs2777899 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4622571 | 0.82[ASN][1000 genomes] |
| rs7224006 | 0.83[ASN][1000 genomes] |
| rs8070345 | 0.81[ASN][1000 genomes] |
| rs8081395 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000267637 | Distal transcriptional regulation |
| GLT8D1 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| ENSG00000263558 | Distal transcriptional regulation |
| TRIM37 | Distal transcriptional regulation |
| ENSG00000224738 | Distal transcriptional regulation |
| HEATR6 | Distal transcriptional regulation |
| ENSG00000267416 | Distal transcriptional regulation |
| LACC1 | Distal transcriptional regulation |
| CCDC122 | Distal transcriptional regulation |
| NFKBIA | Distal transcriptional regulation |
| ENSG00000259006 | Distal transcriptional regulation |
| ENSG00000258947 | Distal transcriptional regulation |
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014