SNP Report
Basic Infomation
| Name | rs2645482 dbSNP |
|---|---|
| Location | chr:17,57943115 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 63)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1024637 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs11650106 | 0.89[ASW][hapmap];0.86[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.87[MKK][hapmap] |
| rs11868009 | 0.82[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12453125 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap] |
| rs1292031 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1292032 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1292034 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1292038 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1292040 | 0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1292041 | 0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1292044 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1292045 | 1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1292046 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1292048 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1292051 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1292053 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1292054 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1292055 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1292058 | 0.81[ASN][1000 genomes] |
| rs1292061 | 0.89[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs1292064 | 0.82[AMR][1000 genomes] |
| rs1292069 | 0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1292071 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs12938273 | 0.82[AMR][1000 genomes] |
| rs1295925 | 0.80[JPT][hapmap] |
| rs1295926 | 0.83[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs1295927 | 0.89[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.96[MKK][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs180519 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs180520 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs180521 | 0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs180524 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs180530 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs180531 | 0.85[CHB][hapmap];0.90[JPT][hapmap] |
| rs180532 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs180534 | 0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2063353 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.81[AMR][1000 genomes] |
| rs2150879 | 0.95[CEU][hapmap];1.00[YRI][hapmap] |
| rs2333563 | 0.80[JPT][hapmap] |
| rs2333617 | 0.80[JPT][hapmap] |
| rs2453913 | 0.80[JPT][hapmap] |
| rs2526355 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2526359 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2645461 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2645462 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2645466 | 0.80[JPT][hapmap] |
| rs2645477 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap] |
| rs2645479 | 0.89[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.83[MEX][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.82[AMR][1000 genomes] |
| rs2645485 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2645490 | 0.80[JPT][hapmap] |
| rs2665397 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs2665404 | 0.89[ASW][hapmap];0.92[CEU][hapmap];0.81[CHB][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs2777889 | 0.80[JPT][hapmap] |
| rs2777898 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap] |
| rs2777899 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs4968401 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs7216805 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7224006 | 0.80[JPT][hapmap] |
| rs8067354 | 0.80[JPT][hapmap] |
| rs8070345 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.80[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap] |
| rs8073823 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs8081108 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap] |
| rs8081395 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap] |
| rs8081468 | 0.80[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VMP1 | Distal transcriptional regulation |
| RPS6KB1 | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| TRIM37 | Distal transcriptional regulation |
| ENSG00000263558 | Distal transcriptional regulation |
| ENSG00000224738 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| RNFT1 | Distal transcriptional regulation |
| ENSG00000267302 | Distal transcriptional regulation |
| TUBD1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014