SNP Report
Name | rs1292053   dbSNP |
---|---|
Location | chr:17,57963537 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1024637 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs11650106 | 0.86[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap] |
rs11868009 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12453125 | 0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes] |
rs1292031 | 0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1292032 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1292034 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1292038 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1292040 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1292041 | 0.88[ASN][1000 genomes] |
rs1292044 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs1292045 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1292046 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1292048 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1292051 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1292054 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1292055 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1292058 | 0.81[ASN][1000 genomes] |
rs1292061 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs1292069 | 0.88[ASN][1000 genomes] |
rs1292071 | 0.80[ASN][1000 genomes] |
rs1295925 | 0.81[JPT][hapmap] |
rs1295927 | 0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[ASN][1000 genomes] |
rs180519 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs180520 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs180521 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs180524 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs180530 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs180531 | 0.86[CHB][hapmap];0.90[JPT][hapmap] |
rs180532 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs180534 | 0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2063353 | 0.92[CEU][hapmap];0.81[CHB][hapmap] |
rs2150879 | 0.95[CEU][hapmap] |
rs2333563 | 0.81[JPT][hapmap] |
rs2333617 | 0.81[JPT][hapmap] |
rs2453913 | 0.81[JPT][hapmap] |
rs2526355 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2526359 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs2645461 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2645462 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2645466 | 0.81[JPT][hapmap] |
rs2645477 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs2645479 | 0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs2645482 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2645483 | 0.80[JPT][hapmap] |
rs2645485 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2645490 | 0.81[JPT][hapmap] |
rs2665397 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap] |
rs2665404 | 0.92[CEU][hapmap];0.81[CHB][hapmap] |
rs2777889 | 0.81[JPT][hapmap] |
rs2777898 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap] |
rs2777899 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs4968401 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs7216805 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7224006 | 0.81[JPT][hapmap] |
rs8067354 | 0.81[JPT][hapmap] |
rs8070345 | 0.88[CEU][hapmap];0.81[JPT][hapmap] |
rs8073823 | 0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs8081108 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap] |
rs8081395 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap] |
rs8081468 | 0.81[JPT][hapmap] |
Symbol | Regulation type |
---|---|
TUBD1 | Distal transcriptional regulation |
RPS6KB1 | Distal transcriptional regulation |
ENSG00000221425 | Distal transcriptional regulation |
HIST2H2AC | Distal transcriptional regulation |
BOLA1 | Distal transcriptional regulation |
HIST2H2AB | Distal transcriptional regulation |
EIF4G1 | Distal transcriptional regulation |
ENSG00000202077 | Distal transcriptional regulation |
TRIM37 | Distal transcriptional regulation |
ENSG00000224738 | Distal transcriptional regulation |
BCAS3 | Distal transcriptional regulation |
TUBD1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014