SNP Report

Basic Infomation

Name	rs1292053 dbSNP
Location	chr:17,57963537
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 61)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1024637	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11650106	0.86[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap]
rs11868009	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12453125	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs1292031	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292032	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292034	0.96[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1292038	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1292040	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1292041	0.88[ASN][1000 genomes]
rs1292044	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1292045	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1292046	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1292048	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1292051	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1292054	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1292055	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1292058	0.81[ASN][1000 genomes]
rs1292061	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs1292069	0.88[ASN][1000 genomes]
rs1292071	0.80[ASN][1000 genomes]
rs1295925	0.81[JPT][hapmap]
rs1295927	0.96[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.81[TSI][hapmap];0.88[ASN][1000 genomes]
rs180519	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs180520	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs180521	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs180524	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs180530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs180531	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs180532	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs180534	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2063353	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs2150879	0.95[CEU][hapmap]
rs2333563	0.81[JPT][hapmap]
rs2333617	0.81[JPT][hapmap]
rs2453913	0.81[JPT][hapmap]
rs2526355	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526359	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2645461	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2645462	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2645466	0.81[JPT][hapmap]
rs2645477	0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2645479	0.92[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs2645482	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2645483	0.80[JPT][hapmap]
rs2645485	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2645490	0.81[JPT][hapmap]
rs2665397	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs2665404	0.92[CEU][hapmap];0.81[CHB][hapmap]
rs2777889	0.81[JPT][hapmap]
rs2777898	0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap]
rs2777899	0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]
rs4968401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7216805	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7224006	0.81[JPT][hapmap]
rs8067354	0.81[JPT][hapmap]
rs8070345	0.88[CEU][hapmap];0.81[JPT][hapmap]
rs8073823	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8081108	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs8081395	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap]
rs8081468	0.81[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
TUBD1	Distal transcriptional regulation
RPS6KB1	Distal transcriptional regulation
ENSG00000221425	Distal transcriptional regulation
HIST2H2AC	Distal transcriptional regulation
BOLA1	Distal transcriptional regulation
HIST2H2AB	Distal transcriptional regulation
EIF4G1	Distal transcriptional regulation
ENSG00000202077	Distal transcriptional regulation
TRIM37	Distal transcriptional regulation
ENSG00000224738	Distal transcriptional regulation
BCAS3	Distal transcriptional regulation
TUBD1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
DBN1	SCAN
DHX40	SCAN
PTRH2	SCAN
CUEDC1	SCAN