SNP Report
Basic Infomation
| Name | rs7209369 dbSNP |
|---|---|
| Location | chr:17,57680480 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11079385 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs11650106 | 0.80[ASW][hapmap] |
| rs11658504 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap] |
| rs12603541 | 0.81[CHB][hapmap] |
| rs1534550 | 0.91[CHB][hapmap] |
| rs1554846 | 0.95[CHB][hapmap] |
| rs2014295 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2014756 | 0.81[ASN][1000 genomes] |
| rs2645477 | 0.80[ASW][hapmap] |
| rs2665397 | 0.80[ASW][hapmap] |
| rs2665404 | 0.80[ASW][hapmap] |
| rs2697388 | 0.82[ASN][1000 genomes] |
| rs2777898 | 0.87[YRI][hapmap] |
| rs2777899 | 0.80[ASW][hapmap] |
| rs28564580 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4968382 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.87[YRI][hapmap] |
| rs4968384 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.86[ASN][1000 genomes] |
| rs4968389 | 0.91[CHB][hapmap] |
| rs56155082 | 0.86[ASN][1000 genomes] |
| rs58210686 | 0.81[ASN][1000 genomes] |
| rs6503921 | 1.00[ASW][hapmap] |
| rs6503923 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6503929 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7207419 | 0.80[ASW][hapmap] |
| rs7210390 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7210832 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.87[YRI][hapmap];0.81[EUR][1000 genomes] |
| rs7210881 | 0.91[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.94[LWK][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.80[EUR][1000 genomes] |
| rs7215464 | 1.00[ASW][hapmap] |
| rs8066493 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs8066828 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs8069123 | 0.91[CHB][hapmap] |
| rs8070345 | 0.80[ASW][hapmap] |
| rs8081108 | 0.80[ASW][hapmap] |
| rs8081395 | 0.80[ASW][hapmap] |
| rs907066 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs916910 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.95[MEX][hapmap] |
| rs9652857 | 0.86[CHB][hapmap] |
| rs9893638 | 0.82[ASN][1000 genomes] |
| rs9896884 | 0.82[ASN][1000 genomes] |
| rs9899390 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.86[ASN][1000 genomes] |
| rs9903999 | 0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap] |
| rs9905730 | 0.91[CHB][hapmap] |
| rs9906665 | 0.81[EUR][1000 genomes] |
| rs9909087 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs9913684 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9914526 | 0.90[ASW][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DHX40 | Proximal transcriptional regulation |
| CLTC | Distal transcriptional regulation |
| DHX40 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014