SNP Report
Basic Infomation
| Name | rs2014756 dbSNP |
|---|---|
| Location | chr:17,57623037 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11654618 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11658504 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2014295 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4968382 | 0.81[EUR][1000 genomes] |
| rs4968383 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4968384 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs56155082 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6503923 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7209369 | 0.81[ASN][1000 genomes] |
| rs7210390 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs7210832 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7210881 | 0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7218306 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs8066493 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8066828 | 0.81[EUR][1000 genomes] |
| rs8067773 | 0.85[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs916910 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9893638 | 0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9896884 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9899390 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9901166 | 0.83[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9903999 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9906665 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9909087 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9911670 | 0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000265313 | Distal transcriptional regulation |
| DHX40 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014