SNP Report
Basic Infomation
| Name | rs4968383 dbSNP |
|---|---|
| Location | chr:17,57597670 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11654618 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11658504 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2014295 | 0.88[EUR][1000 genomes] |
| rs2014756 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs4968382 | 0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4968384 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs56155082 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6503923 | 0.88[EUR][1000 genomes] |
| rs7210390 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7210832 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7210881 | 0.88[EUR][1000 genomes] |
| rs7218306 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs8066493 | 0.88[EUR][1000 genomes] |
| rs8067773 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs916910 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9893638 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9896884 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9899390 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9901166 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9903999 | 0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs9906665 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9909087 | 0.86[EUR][1000 genomes] |
| rs9911670 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CLTC | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014