SNP Report

Basic Infomation

Name	rs4968382 dbSNP
Location	chr:17,57592715
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11654618	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11658504	0.84[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2014295	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2014756	0.81[EUR][1000 genomes]
rs28564580	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap]
rs4968383	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4968384	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs56155082	0.82[EUR][1000 genomes]
rs6503921	1.00[ASW][hapmap];0.88[YRI][hapmap]
rs6503923	1.00[ASW][hapmap];0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.87[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6503929	1.00[ASW][hapmap];0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap]
rs7207419	0.80[ASW][hapmap]
rs7209369	1.00[ASW][hapmap];0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.87[YRI][hapmap]
rs7210390	0.81[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7210832	1.00[ASW][hapmap];0.83[CEU][hapmap];0.82[CHB][hapmap];0.82[CHD][hapmap];0.82[GIH][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7210881	0.91[ASW][hapmap];0.84[CEU][hapmap];0.94[LWK][hapmap];0.86[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7215464	1.00[ASW][hapmap]
rs7218306	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8066493	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8066828	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap]
rs8067773	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs916910	0.84[CEU][hapmap];0.86[CHB][hapmap];0.87[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9893638	0.81[EUR][1000 genomes]
rs9896884	0.81[EUR][1000 genomes]
rs9899390	0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap];0.83[EUR][1000 genomes]
rs9901166	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9903999	1.00[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9906665	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9909087	1.00[ASW][hapmap];0.84[CEU][hapmap];0.82[CHB][hapmap];0.87[LWK][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];0.87[YRI][hapmap];0.87[EUR][1000 genomes]
rs9911670	0.81[EUR][1000 genomes]
rs9913684	1.00[ASW][hapmap];0.84[CEU][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.95[MEX][hapmap];0.81[MKK][hapmap];0.87[YRI][hapmap]
rs9914526	0.90[ASW][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000265313	Distal transcriptional regulation
VMP1	Distal transcriptional regulation
PTRH2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 3)

eQTL related gene	Source
DHX40	SCAN
CLTC	SCAN
PTRH2	SCAN