SNP Report
Basic Infomation
| Name | rs6503921 dbSNP |
|---|---|
| Location | chr:17,57560539 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12150440 | 0.88[JPT][hapmap] |
| rs4968382 | 1.00[ASW][hapmap];0.88[YRI][hapmap] |
| rs6503923 | 1.00[ASW][hapmap] |
| rs6503929 | 1.00[ASW][hapmap] |
| rs7206932 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7207419 | 0.80[ASW][hapmap] |
| rs7209369 | 1.00[ASW][hapmap] |
| rs7210390 | 0.88[YRI][hapmap] |
| rs7210832 | 1.00[ASW][hapmap];0.88[YRI][hapmap] |
| rs7210881 | 0.91[ASW][hapmap];0.88[YRI][hapmap] |
| rs7215464 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9903999 | 0.88[YRI][hapmap] |
| rs9909087 | 1.00[ASW][hapmap] |
| rs9913684 | 1.00[ASW][hapmap] |
| rs9914526 | 0.90[ASW][hapmap];0.87[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CLTC | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| DHX40 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014