SNP Report
Basic Infomation
| Name | rs28564580 dbSNP |
|---|---|
| Location | chr:17,57692689 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11079385 | 0.91[CHB][hapmap] |
| rs11658504 | 1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap] |
| rs12601102 | 0.82[ASN][1000 genomes] |
| rs12603541 | 0.81[CHB][hapmap] |
| rs1534550 | 0.91[CHB][hapmap] |
| rs1554846 | 0.95[CHB][hapmap] |
| rs2014295 | 0.83[ASN][1000 genomes] |
| rs4968382 | 0.84[CEU][hapmap];0.82[CHB][hapmap];0.82[MEX][hapmap] |
| rs4968384 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4968389 | 0.91[CHB][hapmap] |
| rs56155082 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6503923 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs6503929 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7209369 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7210390 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7210832 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.85[TSI][hapmap] |
| rs7210881 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];0.82[JPT][hapmap];0.88[TSI][hapmap] |
| rs8066493 | 0.83[ASN][1000 genomes] |
| rs8066828 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8069123 | 0.91[CHB][hapmap] |
| rs907066 | 0.91[CHB][hapmap] |
| rs916910 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap] |
| rs9652857 | 0.86[CHB][hapmap] |
| rs9899390 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs9903999 | 0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap] |
| rs9905730 | 0.91[CHB][hapmap] |
| rs9909087 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.81[ASN][1000 genomes] |
| rs9913684 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CLTC | Proximal transcriptional regulation |
| DHX40 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014