SNP Report
Basic Infomation
| Name | rs907066 dbSNP |
|---|---|
| Location | chr:17,57740075 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515171 | 0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs10853013 | 0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs10853014 | 0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11079385 | 0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11658001 | 0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11872004 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12601863 | 0.81[ASN][1000 genomes] |
| rs12603541 | 0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1528493 | 0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1534550 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1554846 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16943748 | 0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs16943773 | 0.81[ASN][1000 genomes] |
| rs2014001 | 0.81[ASN][1000 genomes] |
| rs2271303 | 0.82[JPT][hapmap] |
| rs2272411 | 0.86[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs28564580 | 0.91[CHB][hapmap] |
| rs3803861 | 0.81[JPT][hapmap] |
| rs3803862 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3817158 | 0.86[JPT][hapmap] |
| rs4968384 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs4968389 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6503923 | 0.91[CHB][hapmap] |
| rs6503929 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs71372120 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7209369 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs7210390 | 0.90[CHB][hapmap] |
| rs7210832 | 0.91[CHB][hapmap] |
| rs7210881 | 0.87[CHB][hapmap] |
| rs7212825 | 0.86[JPT][hapmap] |
| rs7223899 | 0.85[JPT][hapmap] |
| rs7224631 | 0.81[JPT][hapmap] |
| rs8066828 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs8069123 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8071030 | 0.83[AMR][1000 genomes] |
| rs8071796 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs916910 | 0.86[CHB][hapmap] |
| rs9652857 | 0.92[ASW][hapmap];1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9898835 | 0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9899390 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs9903999 | 0.81[CHB][hapmap] |
| rs9905730 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9909087 | 0.91[CHB][hapmap];0.81[CHD][hapmap] |
| rs9913684 | 0.91[CHB][hapmap];0.82[CHD][hapmap] |
| rs9913835 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CLTC | Proximal transcriptional regulation |
| CLTC | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014