SNP Report

Basic Infomation

Name	rs3803862 dbSNP
Location	chr:17,57696827
Allele	A/G/T

LD-proxy of rSNPs(r²>0.8) (count: 17)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10853013	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10853014	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11079385	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11658001	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11872004	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1534550	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1554846	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3803861	0.82[ASN][1000 genomes]
rs4968389	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71372120	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8069123	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8071796	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs907066	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9652857	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9898835	0.88[ASN][1000 genomes]
rs9905730	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9913835	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CLTC	Proximal transcriptional regulation
CENPN	Distal transcriptional regulation
RPAP2	Distal transcriptional regulation
GLMN	Distal transcriptional regulation
ENSG00000201699	Distal transcriptional regulation
ACTN1	Distal transcriptional regulation
LRRC57	Distal transcriptional regulation
HAUS2	Distal transcriptional regulation
ENSG00000235560	Distal transcriptional regulation
ZNF747	Distal transcriptional regulation
HNRNPD	Distal transcriptional regulation
ENSG00000202077	Distal transcriptional regulation
ENSG00000265313	Distal transcriptional regulation
DHX40	Distal transcriptional regulation
VMP1	Distal transcriptional regulation
PTRH2	Distal transcriptional regulation
SKA2	Distal transcriptional regulation
MIR21	Distal transcriptional regulation
CLTC	Distal transcriptional regulation
ENSG00000201524	Distal transcriptional regulation
DDIT4	Distal transcriptional regulation
RPS24	Distal transcriptional regulation
RPL41	Distal transcriptional regulation
HLA-DMA	Distal transcriptional regulation
BRD2	Distal transcriptional regulation
BRD2-IT1	Distal transcriptional regulation
METTL2B	Distal transcriptional regulation
HILPDA	Distal transcriptional regulation
ENSG00000240758	Distal transcriptional regulation
FAM102A	Distal transcriptional regulation
PAXIP1	Distal transcriptional regulation
LAPTM4A	Distal transcriptional regulation
ENSG00000212195	Distal transcriptional regulation
PRR11	Distal transcriptional regulation
GDPD1	Distal transcriptional regulation
TUBD1	Distal transcriptional regulation
RPS6KB1	Distal transcriptional regulation
HEATR6	Distal transcriptional regulation
ENSG00000267416	Distal transcriptional regulation
B3GAT3	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)