SNP Report

Basic Infomation

Name	rs12601793 dbSNP
Location	chr:17,57638015
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10515171	1.00[CHB][hapmap]
rs12600671	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];0.90[MEX][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12601102	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12603541	1.00[CHB][hapmap]
rs1528493	0.95[CHB][hapmap]
rs16943620	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs16943635	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.90[GIH][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16943748	1.00[CHB][hapmap]
rs2271303	0.91[CHB][hapmap]
rs2271304	0.87[CHB][hapmap]
rs2272411	1.00[CHB][hapmap]
rs3803861	1.00[CHB][hapmap]
rs3817158	0.83[CHB][hapmap]
rs57451310	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58210686	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60041619	0.86[EUR][1000 genomes]
rs68007855	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7207324	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs7208008	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs7208723	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7212825	1.00[CHB][hapmap]
rs7215180	0.87[CHB][hapmap]
rs7223899	1.00[CHB][hapmap]
rs7224631	1.00[CHB][hapmap]
rs72628395	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73329207	0.89[EUR][1000 genomes]
rs73329235	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8069801	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9899611	0.87[CHB][hapmap]
rs9901606	0.87[CHB][hapmap]
rs9903626	0.91[CHB][hapmap]
rs9907923	0.87[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
DHX40	Proximal transcriptional regulation
DHX40	Distal transcriptional regulation
CLTC	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)