SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 20)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10515171	0.81[CHB][hapmap]
rs12600671	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12601793	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[EUR][1000 genomes]
rs16943595	0.82[CHB][hapmap];0.91[YRI][hapmap]
rs16943620	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16943635	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16943748	0.81[CHB][hapmap]
rs3803861	0.81[CHB][hapmap]
rs57451310	0.82[EUR][1000 genomes]
rs57913763	0.86[ASN][1000 genomes]
rs60041619	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68007855	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7207324	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7208723	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7223899	0.81[CHB][hapmap]
rs7224631	0.81[CHB][hapmap]
rs73327056	0.83[ASN][1000 genomes]
rs73329207	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73329235	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8069801	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CLTC	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)