SNP Report
Basic Infomation
| Name | rs2173119 dbSNP |
|---|---|
| Location | chr:17,57859705 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 63)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1051424 | 0.88[CEU][hapmap];0.86[CHB][hapmap] |
| rs10515171 | 0.87[CHB][hapmap];0.87[YRI][hapmap] |
| rs11079389 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12600680 | 0.88[CEU][hapmap];0.86[CHB][hapmap] |
| rs12603541 | 0.86[CHB][hapmap];0.90[YRI][hapmap] |
| rs1292033 | 0.89[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs1292035 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs1292037 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1292042 | 0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap] |
| rs1292043 | 0.88[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap] |
| rs1292050 | 0.89[CEU][hapmap] |
| rs1292063 | 0.87[ASN][1000 genomes] |
| rs1292067 | 0.81[JPT][hapmap] |
| rs1292072 | 0.86[ASN][1000 genomes] |
| rs1295923 | 0.88[CEU][hapmap];0.86[CHB][hapmap] |
| rs1296279 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs13137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1528493 | 0.82[CHB][hapmap] |
| rs16943748 | 0.87[CHB][hapmap] |
| rs16943838 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1874548 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2102507 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2132715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2173120 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2250526 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs2271303 | 0.81[CHB][hapmap] |
| rs2271304 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2272411 | 0.86[CHB][hapmap] |
| rs2526352 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2526353 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs2526354 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs2531899 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs2645467 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2645474 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2645486 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2645487 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2645489 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2645490 | 0.84[CEU][hapmap] |
| rs2645491 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2645492 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2665400 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2665403 | 0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2777886 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2777900 | 0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28516945 | 0.84[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3803861 | 0.87[CHB][hapmap] |
| rs56236317 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs60451858 | 0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7212825 | 0.87[CHB][hapmap] |
| rs7215180 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7221472 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs7223793 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7223899 | 0.91[CHB][hapmap] |
| rs7224631 | 0.87[CHB][hapmap] |
| rs72838857 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72840511 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72840522 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs8080483 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9899611 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9901606 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9903626 | 0.95[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs9907923 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9910518 | 0.81[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000267637 | Proximal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| RNFT1 | Distal transcriptional regulation |
| ENSG00000267302 | Distal transcriptional regulation |
| GNB2L1 | Distal transcriptional regulation |
| SNORD95 | Distal transcriptional regulation |
| CLTC | Distal transcriptional regulation |
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014