SNP Report

Basic Infomation

Name	rs1292072 dbSNP
Location	chr:17,57925649
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11079389	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1292037	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1292042	0.85[ASN][1000 genomes]
rs1292043	0.85[ASN][1000 genomes]
rs1292063	0.88[ASN][1000 genomes]
rs1292066	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13137	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16943838	0.83[ASN][1000 genomes]
rs1874548	0.83[ASN][1000 genomes]
rs2102507	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2132715	0.86[ASN][1000 genomes]
rs2173119	0.86[ASN][1000 genomes]
rs2173120	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2526352	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2526358	0.80[ASN][1000 genomes]
rs2645467	0.86[ASN][1000 genomes]
rs2645474	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2645486	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2645487	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2645489	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2645491	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2645492	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2665400	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2665403	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2777886	0.83[ASN][1000 genomes]
rs2777900	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60451858	0.83[ASN][1000 genomes]
rs7223793	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72838857	0.83[ASN][1000 genomes]
rs72840522	0.83[ASN][1000 genomes]
rs9899611	0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000201524	Proximal transcriptional regulation
ENSG00000267637	Distal transcriptional regulation
ENSG00000240200	Distal transcriptional regulation
ENSG00000231437	Distal transcriptional regulation
ATP1A1	Distal transcriptional regulation
HIST2H2BE	Distal transcriptional regulation
HIST2H2AC	Distal transcriptional regulation
BOLA1	Distal transcriptional regulation
HIST2H2AB	Distal transcriptional regulation
C1orf106	Distal transcriptional regulation
ENSG00000212694	Distal transcriptional regulation
ENSG00000256392	Distal transcriptional regulation
SETD1B	Distal transcriptional regulation
ENSG00000258639	Distal transcriptional regulation
APRT	Distal transcriptional regulation
ZMYND8	Distal transcriptional regulation
ENSG00000231119	Distal transcriptional regulation
ZNF217	Distal transcriptional regulation
BMP7	Distal transcriptional regulation
ENSG00000226308	Distal transcriptional regulation
HIST1H3J	Distal transcriptional regulation
BOP1	Distal transcriptional regulation
HSF1	Distal transcriptional regulation
WDR67	Distal transcriptional regulation
DERL1	Distal transcriptional regulation
SPIN1	Distal transcriptional regulation
PLK2	Distal transcriptional regulation
MAL2	Distal transcriptional regulation
ZFAND5	Distal transcriptional regulation
ENSG00000223247	Distal transcriptional regulation
ERBB4	Distal transcriptional regulation
UTP3	Distal transcriptional regulation
LINC00854	Distal transcriptional regulation
TOB1	Distal transcriptional regulation
TOB1-AS1	Distal transcriptional regulation
ENSG00000212195	Distal transcriptional regulation
ENSG00000202077	Distal transcriptional regulation
ENSG00000266826	Distal transcriptional regulation
ENSG00000216168	Distal transcriptional regulation
TRIM37	Distal transcriptional regulation
ENSG00000263558	Distal transcriptional regulation
ENSG00000224738	Distal transcriptional regulation
TBX2	Distal transcriptional regulation
ENSG00000267280	Distal transcriptional regulation
C17orf82	Distal transcriptional regulation
RNFT1	Distal transcriptional regulation
ENSG00000267302	Distal transcriptional regulation
HEATR6	Distal transcriptional regulation
ENSG00000267131	Distal transcriptional regulation
ZNF362	Distal transcriptional regulation
LAMTOR2	Distal transcriptional regulation
RNU5A-8P	Distal transcriptional regulation
PITRM1	Distal transcriptional regulation
BLOC1S2	Distal transcriptional regulation
KRT80	Distal transcriptional regulation
RNU4-2	Distal transcriptional regulation
RNU4-1	Distal transcriptional regulation
POMT2	Distal transcriptional regulation
GSTZ1	Distal transcriptional regulation
CDCA4	Distal transcriptional regulation
FLOT1	Distal transcriptional regulation
IER3	Distal transcriptional regulation
HOOK2	Distal transcriptional regulation
IWS1	Distal transcriptional regulation
ZNF558	Distal transcriptional regulation
MBD3L1	Distal transcriptional regulation
ISY1	Distal transcriptional regulation
ISY1-RAB43	Distal transcriptional regulation
PPP2R4	Distal transcriptional regulation
SIX5	Distal transcriptional regulation
ENSG00000267395	Distal transcriptional regulation
DMPK	Distal transcriptional regulation
RAVER1	Distal transcriptional regulation
FXYD3	Distal transcriptional regulation
C2orf47	Distal transcriptional regulation
TYW5	Distal transcriptional regulation
TNK2	Distal transcriptional regulation
TEX14	Distal transcriptional regulation
RAD51C	Distal transcriptional regulation
CLTC	Distal transcriptional regulation
PRKAR1A	Distal transcriptional regulation
ENSG00000263931	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)