SNP Report
Basic Infomation
| Name | rs1292037 dbSNP |
|---|---|
| Location | chr:17,57918908 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 63)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1051424 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.92[MEX][hapmap] |
| rs10515171 | 0.89[ASW][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];0.86[LWK][hapmap];0.89[MKK][hapmap];0.87[YRI][hapmap] |
| rs11079389 | 1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs12600680 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap] |
| rs12603541 | 0.86[CHB][hapmap];0.88[YRI][hapmap] |
| rs1292033 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs1292035 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap] |
| rs1292042 | 0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[MEX][hapmap] |
| rs1292043 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs1292050 | 0.88[CEU][hapmap] |
| rs1292063 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1292066 | 0.85[EUR][1000 genomes] |
| rs1292067 | 0.82[JPT][hapmap] |
| rs1292072 | 0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs1295923 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.82[CHB][hapmap];0.91[MEX][hapmap] |
| rs1296279 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap] |
| rs13137 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1528493 | 0.82[CHB][hapmap];0.90[CHD][hapmap] |
| rs16943748 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs16943838 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1874548 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2102507 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2132715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2173119 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2173120 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2250526 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap] |
| rs2271303 | 0.90[CHD][hapmap] |
| rs2271304 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes] |
| rs2272411 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs2526352 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2526353 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.86[MKK][hapmap] |
| rs2526354 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap] |
| rs2531899 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap] |
| rs2645467 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.92[ASN][1000 genomes] |
| rs2645474 | 0.88[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2645486 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2645487 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2645489 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2645490 | 0.84[CEU][hapmap] |
| rs2645491 | 0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2645492 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2665400 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2665403 | 1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.93[MEX][hapmap];0.95[MKK][hapmap];0.96[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2777886 | 0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2777900 | 0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28516945 | 0.82[ASN][1000 genomes] |
| rs56236317 | 0.85[ASN][1000 genomes] |
| rs60451858 | 0.82[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7212825 | 0.87[CHB][hapmap];0.93[CHD][hapmap] |
| rs7215180 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.85[ASN][1000 genomes] |
| rs7221472 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap] |
| rs7223793 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7223899 | 0.91[CHB][hapmap] |
| rs7224631 | 0.87[CHB][hapmap];0.88[CHD][hapmap] |
| rs72838857 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs72840511 | 0.83[ASN][1000 genomes] |
| rs72840522 | 0.90[ASN][1000 genomes] |
| rs8080483 | 0.81[ASN][1000 genomes] |
| rs9899611 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9901606 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.83[ASN][1000 genomes] |
| rs9903626 | 0.95[CHB][hapmap];0.81[JPT][hapmap] |
| rs9907923 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs9910518 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PARP16 | Distal transcriptional regulation |
| PHLDA1 | Distal transcriptional regulation |
| PNRC1 | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| PTRH2 | Distal transcriptional regulation |
| ENSG00000267637 | Distal transcriptional regulation |
| TUBD1 | Distal transcriptional regulation |
| RPS6KB1 | Distal transcriptional regulation |
| RNFT1 | Distal transcriptional regulation |
| ENSG00000267302 | Distal transcriptional regulation |
| CSDE1 | Distal transcriptional regulation |
| CACYBP | Distal transcriptional regulation |
| WDR37 | Distal transcriptional regulation |
| ANXA7 | Distal transcriptional regulation |
| IRF7 | Distal transcriptional regulation |
| EHD1 | Distal transcriptional regulation |
| ENSG00000256514 | Distal transcriptional regulation |
| CLCF1 | Distal transcriptional regulation |
| C11orf65 | Distal transcriptional regulation |
| B3GAT1 | Distal transcriptional regulation |
| KRT8 | Distal transcriptional regulation |
| MAP3K12 | Distal transcriptional regulation |
| CPSF6 | Distal transcriptional regulation |
| ZMYM5 | Distal transcriptional regulation |
| HSPH1 | Distal transcriptional regulation |
| LACC1 | Distal transcriptional regulation |
| CCDC122 | Distal transcriptional regulation |
| NFKBIA | Distal transcriptional regulation |
| RPS29 | Distal transcriptional regulation |
| RN7SL1 | Distal transcriptional regulation |
| ENSG00000266422 | Distal transcriptional regulation |
| ZFP36L1 | Distal transcriptional regulation |
| SPTLC2 | Distal transcriptional regulation |
| JMJD8 | Distal transcriptional regulation |
| FOPNL | Distal transcriptional regulation |
| APRT | Distal transcriptional regulation |
| ZMYND8 | Distal transcriptional regulation |
| ENSG00000231119 | Distal transcriptional regulation |
| ZNF217 | Distal transcriptional regulation |
| HIST1H1C | Distal transcriptional regulation |
| ENSG00000233895 | Distal transcriptional regulation |
| ENSG00000268628 | Distal transcriptional regulation |
| PMEPA1 | Distal transcriptional regulation |
| HIST1H2BK | Distal transcriptional regulation |
| HIST1H2AH | Distal transcriptional regulation |
| MIR3143 | Distal transcriptional regulation |
| SNHG6 | Distal transcriptional regulation |
| RBM38 | Distal transcriptional regulation |
| SPTSSB | Distal transcriptional regulation |
| ENSG00000203266 | Distal transcriptional regulation |
| FAM120AOS | Distal transcriptional regulation |
| HLA-DMA | Distal transcriptional regulation |
| BRD2 | Distal transcriptional regulation |
| BRD2-IT1 | Distal transcriptional regulation |
| ENSG00000263756 | Distal transcriptional regulation |
| CLIC3 | Distal transcriptional regulation |
| PDAP1 | Distal transcriptional regulation |
| BUD31 | Distal transcriptional regulation |
| HIST1H2BD | Distal transcriptional regulation |
| ZFAND5 | Distal transcriptional regulation |
| ADD1 | Distal transcriptional regulation |
| SULF2 | Distal transcriptional regulation |
| MGAT1 | Distal transcriptional regulation |
| BEND3 | Distal transcriptional regulation |
| FLOT1 | Distal transcriptional regulation |
| IER3 | Distal transcriptional regulation |
| TSTA3 | Distal transcriptional regulation |
| ENSG00000228393 | Distal transcriptional regulation |
| MLL5 | Distal transcriptional regulation |
| ENSG00000265131 | Distal transcriptional regulation |
| ENSG00000239569 | Distal transcriptional regulation |
| GRHL2 | Distal transcriptional regulation |
| ENSG00000254024 | Distal transcriptional regulation |
| MIR4756 | Distal transcriptional regulation |
| ENSG00000267211 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| ENSG00000266826 | Distal transcriptional regulation |
| TEX14 | Distal transcriptional regulation |
| RAD51C | Distal transcriptional regulation |
| ENSG00000216168 | Distal transcriptional regulation |
| TRIM37 | Distal transcriptional regulation |
| ENSG00000263558 | Distal transcriptional regulation |
| ENSG00000224738 | Distal transcriptional regulation |
| CLTC | Distal transcriptional regulation |
| HEATR6 | Distal transcriptional regulation |
| ENSG00000267416 | Distal transcriptional regulation |
| TBX2 | Distal transcriptional regulation |
| ENSG00000267280 | Distal transcriptional regulation |
| C17orf82 | Distal transcriptional regulation |
| ENSG00000267131 | Distal transcriptional regulation |
| PPM1D | Distal transcriptional regulation |
| CACNG4 | Distal transcriptional regulation |
| ENSG00000246731 | Distal transcriptional regulation |
| TTYH2 | Distal transcriptional regulation |
| ICT1 | Distal transcriptional regulation |
| APPBP2 | Distal transcriptional regulation |
| ENSG00000259349 | Distal transcriptional regulation |
| ENSG00000263422 | Distal transcriptional regulation |
| ENSG00000266701 | Distal transcriptional regulation |
| ENSG00000265638 | Distal transcriptional regulation |
| ENSG00000263820 | Distal transcriptional regulation |
| MIR4737 | Distal transcriptional regulation |
| RHOC | Distal transcriptional regulation |
| TRIM33 | Distal transcriptional regulation |
| ENSG00000234222 | Distal transcriptional regulation |
| RBM8A | Distal transcriptional regulation |
| TP53BP2 | Distal transcriptional regulation |
| GATA3 | Distal transcriptional regulation |
| HK1 | Distal transcriptional regulation |
| STIP1 | Distal transcriptional regulation |
| CBX5 | Distal transcriptional regulation |
| HNRNPA1 | Distal transcriptional regulation |
| MYL6B | Distal transcriptional regulation |
| FGD6 | Distal transcriptional regulation |
| VEZT | Distal transcriptional regulation |
| MSI1 | Distal transcriptional regulation |
| RPS27P25 | Distal transcriptional regulation |
| RALGAPA1 | Distal transcriptional regulation |
| ENSG00000258377 | Distal transcriptional regulation |
| MSRB1 | Distal transcriptional regulation |
| EMP2 | Distal transcriptional regulation |
| STX1B | Distal transcriptional regulation |
| ANKRD11 | Distal transcriptional regulation |
| SPG7 | Distal transcriptional regulation |
| TTLL3 | Distal transcriptional regulation |
| CYP24A1 | Distal transcriptional regulation |
| YWHAQ | Distal transcriptional regulation |
| ZNF544 | Distal transcriptional regulation |
| ENSG00000269545 | Distal transcriptional regulation |
| HIST1H3J | Distal transcriptional regulation |
| HIST1H2AM | Distal transcriptional regulation |
| HIST1H2BO | Distal transcriptional regulation |
| HIST1H2BH | Distal transcriptional regulation |
| HNRPDL | Distal transcriptional regulation |
| SIX5 | Distal transcriptional regulation |
| ENSG00000267395 | Distal transcriptional regulation |
| FOSL2 | Distal transcriptional regulation |
| MZB1 | Distal transcriptional regulation |
| ENSG00000204055 | Distal transcriptional regulation |
| IER5L | Distal transcriptional regulation |
| BMP7 | Distal transcriptional regulation |
| ENSG00000226308 | Distal transcriptional regulation |
| RPP25L | Distal transcriptional regulation |
| ENSG00000225563 | Distal transcriptional regulation |
| HIST1H2BJ | Distal transcriptional regulation |
| HIST1H2AG | Distal transcriptional regulation |
| UBE2R2 | Distal transcriptional regulation |
| PRDX3P4 | Distal transcriptional regulation |
| TFG | Distal transcriptional regulation |
| RTEL1-TNFRSF6B | Distal transcriptional regulation |
| DTYMK | Distal transcriptional regulation |
| MIR4429 | Distal transcriptional regulation |
| GREB1 | Distal transcriptional regulation |
| PHF15 | Distal transcriptional regulation |
| PLEKHG2 | Distal transcriptional regulation |
| NUFIP2 | Distal transcriptional regulation |
| KRT15 | Distal transcriptional regulation |
| ENSG00000188825 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| PPM1E | Distal transcriptional regulation |
| ENSG00000267678 | Distal transcriptional regulation |
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014