SNP Report
Basic Infomation
| Name | rs7221472 dbSNP |
|---|---|
| Location | chr:17,58036737 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1051424 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap] |
| rs11079389 | 0.88[CEU][hapmap];0.82[JPT][hapmap];0.95[MKK][hapmap] |
| rs1148559 | 0.92[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1148560 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs12600680 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1291947 | 0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1292033 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1292035 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1292037 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap] |
| rs1292039 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1292042 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap] |
| rs1292043 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.96[TSI][hapmap];0.80[AMR][1000 genomes] |
| rs1292049 | 0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1292050 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1292057 | 0.85[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1292059 | 0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1292067 | 0.91[JPT][hapmap] |
| rs1295923 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs1296279 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1299514 | 0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs13137 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs180515 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1874548 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap] |
| rs2102507 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs2132715 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs2173119 | 0.88[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap] |
| rs2173120 | 0.87[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs2250526 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2526353 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2526354 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2526358 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2531898 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2531899 | 0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2645467 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs2645478 | 0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2645481 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2645486 | 0.88[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap] |
| rs2645487 | 0.88[CEU][hapmap];0.82[CHB][hapmap];0.83[JPT][hapmap] |
| rs2645489 | 0.87[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap] |
| rs2645492 | 0.88[CEU][hapmap];0.91[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap] |
| rs2665403 | 0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap] |
| rs7219089 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7224366 | 0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs72840315 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9789060 | 0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RNFT1 | Proximal transcriptional regulation |
| TUBD1 | Distal transcriptional regulation |
| RPS6KB1 | Distal transcriptional regulation |
| ENSG00000267318 | RNA binding protein mediated regulation |
| RNFT1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014