SNP Report
Basic Infomation
| Name | rs180515 dbSNP |
|---|---|
| Location | chr:17,58024275 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1051424 | 0.95[JPT][hapmap] |
| rs12453125 | 0.87[CEU][hapmap] |
| rs12600680 | 0.95[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs1292033 | 0.91[JPT][hapmap] |
| rs1292035 | 0.91[JPT][hapmap] |
| rs1292042 | 0.86[JPT][hapmap] |
| rs1292043 | 0.86[JPT][hapmap] |
| rs1292047 | 0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1292067 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap] |
| rs1296279 | 0.91[JPT][hapmap] |
| rs180528 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs180536 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2250526 | 0.81[CHD][hapmap];0.91[JPT][hapmap] |
| rs2526353 | 0.91[JPT][hapmap] |
| rs2526354 | 0.91[JPT][hapmap] |
| rs2531899 | 0.91[JPT][hapmap] |
| rs7221472 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPS6KB1 | Proximal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| RNFT1 | Distal transcriptional regulation |
| ENSG00000267302 | Distal transcriptional regulation |
| RPS6KB1 | RNA binding protein mediated regulation |
| ENSG00000267318 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014