SNP Report
Basic Infomation
| Name | rs180536 dbSNP |
|---|---|
| Location | chr:17,57996806 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1148559 | 0.82[ASN][1000 genomes] |
| rs1148560 | 0.81[ASN][1000 genomes] |
| rs1291947 | 0.83[ASN][1000 genomes] |
| rs1292033 | 0.83[ASN][1000 genomes] |
| rs1292035 | 0.83[ASN][1000 genomes] |
| rs1292039 | 0.81[ASN][1000 genomes] |
| rs1292047 | 0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1292049 | 0.80[ASN][1000 genomes] |
| rs1292050 | 0.81[ASN][1000 genomes] |
| rs1292059 | 0.80[ASN][1000 genomes] |
| rs1292067 | 0.88[ASN][1000 genomes] |
| rs1295923 | 0.81[ASN][1000 genomes] |
| rs1296279 | 0.81[ASN][1000 genomes] |
| rs180515 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs180528 | 0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2526353 | 0.83[ASN][1000 genomes] |
| rs2526354 | 0.81[ASN][1000 genomes] |
| rs2531899 | 0.81[ASN][1000 genomes] |
| rs2645481 | 0.81[ASN][1000 genomes] |
| rs7224366 | 0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000241913 | Distal transcriptional regulation |
| RNFT1 | Distal transcriptional regulation |
| ENSG00000267302 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| USP32 | Distal transcriptional regulation |
| C17orf64 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014