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rVarBase
SNP Report
Basic Infomation
Name
rs180528  
dbSNP
Location
chr:17,58005286
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1148559
0.82[ASN][1000 genomes]
rs1148560
0.81[ASN][1000 genomes]
rs1291947
0.81[ASN][1000 genomes]
rs1292033
0.80[ASN][1000 genomes]
rs1292035
0.80[ASN][1000 genomes]
rs1292047
0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1292067
0.86[ASN][1000 genomes]
rs180515
0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs180536
0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2526353
0.80[ASN][1000 genomes]
rs2531898
0.82[ASN][1000 genomes]
rs2531899
0.83[ASN][1000 genomes]
rs2645478
0.81[ASN][1000 genomes]
rs9789060
0.81[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
RPS6KB1
Proximal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)