SNP Report

Basic Infomation

Name	rs28516945 dbSNP
Location	chr:17,57816578
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11079389	0.83[ASN][1000 genomes]
rs1292037	0.82[ASN][1000 genomes]
rs13137	0.82[ASN][1000 genomes]
rs16943838	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1874548	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2102507	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2132715	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2173119	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2173120	0.82[ASN][1000 genomes]
rs2271303	0.81[ASN][1000 genomes]
rs2271304	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2526352	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2645467	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2645474	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2645486	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2645487	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2645489	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2645491	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2645492	0.85[ASN][1000 genomes]
rs2665400	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2665403	0.82[ASN][1000 genomes]
rs2777886	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2777900	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs28465103	0.81[ASN][1000 genomes]
rs56236317	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57592560	0.81[ASN][1000 genomes]
rs60451858	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7212825	0.84[ASN][1000 genomes]
rs7215180	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7223793	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7226149	0.87[ASN][1000 genomes]
rs72838857	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72840511	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72840522	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8080483	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9899611	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9901606	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9903626	0.90[ASN][1000 genomes]
rs9907923	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9910518	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VMP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)