SNP Report

Basic Infomation

Name	rs8080483 dbSNP
Location	chr:17,57801422
Allele	A/C

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11079389	0.81[ASN][1000 genomes]
rs1292037	0.81[ASN][1000 genomes]
rs13137	0.81[ASN][1000 genomes]
rs16943838	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1874548	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2102507	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2132715	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2173119	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2173120	0.81[ASN][1000 genomes]
rs2271304	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2645467	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2645474	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2645486	0.81[ASN][1000 genomes]
rs2645487	0.81[ASN][1000 genomes]
rs2645489	0.81[ASN][1000 genomes]
rs2645491	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2645492	0.84[ASN][1000 genomes]
rs2665400	0.81[ASN][1000 genomes]
rs2665403	0.81[ASN][1000 genomes]
rs2777886	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2777900	0.83[ASN][1000 genomes]
rs28516945	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56236317	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60451858	0.88[ASN][1000 genomes]
rs7212825	0.83[ASN][1000 genomes]
rs7215180	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7223793	0.81[ASN][1000 genomes]
rs7226149	0.86[ASN][1000 genomes]
rs72838857	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72840511	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72840522	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9899611	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9901606	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9903626	0.89[ASN][1000 genomes]
rs9907923	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9910518	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VMP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)