SNP Report
Basic Infomation
| Name | rs57592560 dbSNP |
|---|---|
| Location | chr:17,57762023 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515171 | 0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10853014 | 0.80[ASN][1000 genomes] |
| rs12601863 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12603541 | 0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1528493 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1554846 | 0.82[ASN][1000 genomes] |
| rs16943748 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs16943773 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2014001 | 0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2271303 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2271304 | 0.82[ASN][1000 genomes] |
| rs2272411 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28465103 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28516945 | 0.81[ASN][1000 genomes] |
| rs2877975 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs3803861 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3817158 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs60164173 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs71372120 | 0.81[ASN][1000 genomes] |
| rs7212825 | 0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7223899 | 0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7224631 | 0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7226149 | 0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs72840511 | 0.82[ASN][1000 genomes] |
| rs9901606 | 0.81[ASN][1000 genomes] |
| rs9903626 | 0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9910518 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CLTC | Proximal transcriptional regulation |
| PTRH2 | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| CLTC | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014