SNP Report
Basic Infomation
| Name | rs1292066 dbSNP |
|---|---|
| Location | chr:17,57932314 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 35)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1148559 | 0.86[ASN][1000 genomes] |
| rs1148560 | 0.85[ASN][1000 genomes] |
| rs1291947 | 0.87[ASN][1000 genomes] |
| rs1292033 | 0.88[ASN][1000 genomes] |
| rs1292035 | 0.88[ASN][1000 genomes] |
| rs1292037 | 0.85[EUR][1000 genomes] |
| rs1292039 | 0.89[ASN][1000 genomes] |
| rs1292042 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1292043 | 0.84[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1292049 | 0.90[ASN][1000 genomes] |
| rs1292050 | 0.89[ASN][1000 genomes] |
| rs1292057 | 0.86[ASN][1000 genomes] |
| rs1292059 | 0.88[ASN][1000 genomes] |
| rs1292067 | 0.83[ASN][1000 genomes] |
| rs1292072 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs1295923 | 0.88[ASN][1000 genomes] |
| rs1296279 | 0.89[ASN][1000 genomes] |
| rs1299514 | 0.92[ASN][1000 genomes] |
| rs13137 | 0.85[EUR][1000 genomes] |
| rs2173120 | 0.81[EUR][1000 genomes] |
| rs2250526 | 0.92[ASN][1000 genomes] |
| rs2526352 | 0.82[EUR][1000 genomes] |
| rs2526353 | 0.88[ASN][1000 genomes] |
| rs2526354 | 0.89[ASN][1000 genomes] |
| rs2526358 | 0.94[ASN][1000 genomes] |
| rs2531898 | 0.83[ASN][1000 genomes] |
| rs2531899 | 0.84[ASN][1000 genomes] |
| rs2645478 | 0.82[ASN][1000 genomes] |
| rs2645481 | 0.89[ASN][1000 genomes] |
| rs2645486 | 0.81[EUR][1000 genomes] |
| rs2645487 | 0.81[EUR][1000 genomes] |
| rs2665403 | 0.81[EUR][1000 genomes] |
| rs7223793 | 0.83[EUR][1000 genomes] |
| rs7224366 | 0.89[ASN][1000 genomes] |
| rs9789060 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000267637 | Distal transcriptional regulation |
| RNU5E-6P | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| BOLA1 | Distal transcriptional regulation |
| HIST2H2AB | Distal transcriptional regulation |
| PARD6B | Distal transcriptional regulation |
| BMP7 | Distal transcriptional regulation |
| ENSG00000226308 | Distal transcriptional regulation |
| RPS14 | Distal transcriptional regulation |
| HIST1H3B | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| ENSG00000216168 | Distal transcriptional regulation |
| TRIM37 | Distal transcriptional regulation |
| ENSG00000263558 | Distal transcriptional regulation |
| ENSG00000224738 | Distal transcriptional regulation |
| ENSG00000267280 | Distal transcriptional regulation |
| TBX2 | Distal transcriptional regulation |
| ENSG00000267131 | Distal transcriptional regulation |
| ENSG00000233396 | Distal transcriptional regulation |
| ENSG00000201558 | Distal transcriptional regulation |
| ZMYND8 | Distal transcriptional regulation |
| PREX1 | Distal transcriptional regulation |
| ENSG00000263938 | Distal transcriptional regulation |
| C17orf82 | Distal transcriptional regulation |
| RNFT1 | Distal transcriptional regulation |
| ENSG00000267302 | Distal transcriptional regulation |
| ENSG00000261040 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014