SNP Report
Basic Infomation
| Name | rs1292063 dbSNP |
|---|---|
| Location | chr:17,57907768 |
| Allele | T/A |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11079389 | 0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1292037 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1292072 | 0.88[ASN][1000 genomes] |
| rs13137 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs16943838 | 0.85[ASN][1000 genomes] |
| rs1874548 | 0.85[ASN][1000 genomes] |
| rs2102507 | 0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2132715 | 0.87[ASN][1000 genomes] |
| rs2173119 | 0.87[ASN][1000 genomes] |
| rs2173120 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2526352 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2645467 | 0.87[ASN][1000 genomes] |
| rs2645474 | 0.85[ASN][1000 genomes] |
| rs2645486 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2645487 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2645489 | 0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2645491 | 0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2645492 | 0.82[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2665400 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2665403 | 0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2777886 | 0.85[ASN][1000 genomes] |
| rs2777900 | 0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60451858 | 0.85[ASN][1000 genomes] |
| rs7223793 | 0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs72838857 | 0.85[ASN][1000 genomes] |
| rs72840522 | 0.85[ASN][1000 genomes] |
| rs9899611 | 0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000267637 | Distal transcriptional regulation |
| PTRH2 | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| HACL1 | Distal transcriptional regulation |
| BTD | Distal transcriptional regulation |
| GLT8D1 | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| ENSG00000263558 | Distal transcriptional regulation |
| TRIM37 | Distal transcriptional regulation |
| ENSG00000224738 | Distal transcriptional regulation |
| PPM1D | Distal transcriptional regulation |
| KRT8 | Distal transcriptional regulation |
| NFKBIA | Distal transcriptional regulation |
| ENSG00000259006 | Distal transcriptional regulation |
| ENSG00000258947 | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014