SNP Report
Basic Infomation
| Name | rs6687169 dbSNP |
|---|---|
| Location | chr:1,155902386 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264415 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs11264418 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12066633 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12080245 | 1.00[MEX][hapmap] |
| rs12095373 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs1804478 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs2152050 | 0.93[AFR][1000 genomes] |
| rs2152051 | 1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs41409345 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs550092 | 0.83[AFR][1000 genomes] |
| rs605025 | 1.00[ASW][hapmap] |
| rs605472 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes] |
| rs6427292 | 0.81[AFR][1000 genomes] |
| rs6674865 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6692929 | 1.00[MEX][hapmap] |
| rs6693485 | 0.89[AMR][1000 genomes] |
| rs7546314 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs822516 | 0.81[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARHGEF2 | Distal transcriptional regulation |
| RIT1 | Distal transcriptional regulation |
| ENSG00000227010 | Distal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| RXFP4 | Distal transcriptional regulation |
| RAB25 | Distal transcriptional regulation |
| SSR2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014