SNP Report

Basic Infomation

Name	rs605025 dbSNP
Location	chr:1,155887772
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1010033	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1018730	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1055184	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10908485	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11264421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12039053	0.97[EUR][1000 genomes]
rs12138833	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs12747344	1.00[CEU][hapmap];0.94[TSI][hapmap];0.99[EUR][1000 genomes]
rs1544119	1.00[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs1749407	0.92[EUR][1000 genomes]
rs1749408	0.86[EUR][1000 genomes]
rs1749409	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1765275	0.85[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1964951	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2275079	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2275081	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2364402	0.97[EUR][1000 genomes]
rs2364404	1.00[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes]
rs28379575	0.96[EUR][1000 genomes]
rs2886069	0.97[EUR][1000 genomes]
rs34078097	0.96[EUR][1000 genomes]
rs34802187	0.99[EUR][1000 genomes]
rs35138477	0.82[EUR][1000 genomes]
rs35588936	0.89[CEU][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes]
rs35730001	0.96[EUR][1000 genomes]
rs3768280	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4412586	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4661160	0.97[EUR][1000 genomes]
rs4661162	1.00[CEU][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes]
rs4661170	0.95[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4661172	1.00[CEU][hapmap];0.94[TSI][hapmap];0.97[EUR][1000 genomes]
rs493446	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs506688	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs527113	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs536870	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs572609	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6660802	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6667096	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6687169	1.00[ASW][hapmap]
rs708614	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71628697	1.00[EUR][1000 genomes]
rs71628699	0.84[EUR][1000 genomes]
rs822502	0.91[EUR][1000 genomes]
rs822503	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs822519	1.00[CEU][hapmap]
rs822653	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
KIAA0907	Proximal transcriptional regulation
KIAA0907	Distal transcriptional regulation
RIT1	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)