SNP Report
Basic Infomation
| Name | rs2275079 dbSNP |
|---|---|
| Location | chr:1,155904177 |
| Allele | T/A/C |
LD-proxy of rSNPs(r2>0.8) (count: 49)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1010033 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1018730 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1055184 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs10908485 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1094558 | 0.84[AFR][1000 genomes] |
| rs11264421 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12039053 | 0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12129384 | 0.92[AFR][1000 genomes] |
| rs12138833 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12747344 | 1.00[CEU][hapmap];0.97[EUR][1000 genomes] |
| rs1544119 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1749407 | 0.91[EUR][1000 genomes] |
| rs1749408 | 0.85[EUR][1000 genomes] |
| rs1749409 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1765275 | 0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs1964951 | 0.94[EUR][1000 genomes] |
| rs2275071 | 0.92[ASN][1000 genomes] |
| rs2275081 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2364402 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2364404 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs28379575 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2886069 | 0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs34078097 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs34802187 | 0.97[EUR][1000 genomes] |
| rs35138477 | 0.84[EUR][1000 genomes] |
| rs35588936 | 0.89[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs35730001 | 0.94[EUR][1000 genomes] |
| rs3738587 | 1.00[CHB][hapmap];0.86[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs3768280 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4412586 | 0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4661160 | 0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4661162 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4661170 | 0.97[EUR][1000 genomes] |
| rs4661172 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs493446 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs506688 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs527113 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs536870 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs572609 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs605025 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs6660802 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6667096 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs708614 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs71628697 | 0.99[EUR][1000 genomes] |
| rs71628699 | 0.85[EUR][1000 genomes] |
| rs822502 | 0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs822503 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs822519 | 1.00[CEU][hapmap] |
| rs822653 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| KIAA0907 | Proximal transcriptional regulation |
| BLMH | Distal transcriptional regulation |
| RBM26 | Distal transcriptional regulation |
| TRIM13 | Distal transcriptional regulation |
| STARD9 | Distal transcriptional regulation |
| TMEM87A | Distal transcriptional regulation |
| GANC | Distal transcriptional regulation |
| ARMC5 | Distal transcriptional regulation |
| ALDOA | Distal transcriptional regulation |
| ENSG00000266402 | Distal transcriptional regulation |
| SNORD104 | Distal transcriptional regulation |
| SNORA76 | Distal transcriptional regulation |
| ITGA3 | Distal transcriptional regulation |
| PELP1 | Distal transcriptional regulation |
| ENSG00000244184 | Distal transcriptional regulation |
| ENSG00000266947 | Distal transcriptional regulation |
| SLFN5 | Distal transcriptional regulation |
| FBF1 | Distal transcriptional regulation |
| ENSG00000264235 | Distal transcriptional regulation |
| MYL12B | Distal transcriptional regulation |
| ENSG00000267598 | Distal transcriptional regulation |
| POLD1 | Distal transcriptional regulation |
| ERCC1 | Distal transcriptional regulation |
| ASF1B | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| OSBPL10 | Distal transcriptional regulation |
| ITGA2 | Distal transcriptional regulation |
| FNIP1 | Distal transcriptional regulation |
| COL4A3BP | Distal transcriptional regulation |
| C5orf28 | Distal transcriptional regulation |
| ENSG00000249492 | Distal transcriptional regulation |
| HIST1H2AD | Distal transcriptional regulation |
| HIST1H3D | Distal transcriptional regulation |
| HSPA1L | Distal transcriptional regulation |
| HSPA1A | Distal transcriptional regulation |
| ENSG00000225791 | Distal transcriptional regulation |
| HIST1H3B | Distal transcriptional regulation |
| POR | Distal transcriptional regulation |
| MIR4651 | Distal transcriptional regulation |
| HNRNPA2B1 | Distal transcriptional regulation |
| CBX3 | Distal transcriptional regulation |
| SH3GLB2 | Distal transcriptional regulation |
| RPL36A | Distal transcriptional regulation |
| ENSG00000257529 | Distal transcriptional regulation |
| LONRF3 | Distal transcriptional regulation |
| RNU5E-4P | Distal transcriptional regulation |
| RCC1 | Distal transcriptional regulation |
| STXBP3 | Distal transcriptional regulation |
| ENSG00000270066 | Distal transcriptional regulation |
| LIX1L | Distal transcriptional regulation |
| ARHGEF2 | Distal transcriptional regulation |
| ENSG00000227010 | Distal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| SSR2 | Distal transcriptional regulation |
| MEX3A | Distal transcriptional regulation |
| LMNA | Distal transcriptional regulation |
| GON4L | Distal transcriptional regulation |
| RIT1 | Distal transcriptional regulation |
| KIAA0907 | Distal transcriptional regulation |
| RXFP4 | Distal transcriptional regulation |
| SCARNA4 | Distal transcriptional regulation |
| ENSG00000224276 | Distal transcriptional regulation |
| SYT11 | Distal transcriptional regulation |
| RAB25 | Distal transcriptional regulation |
| SLC25A44 | Distal transcriptional regulation |
| DEGS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014