SNP Report
Basic Infomation
| Name | rs822519 dbSNP |
|---|---|
| Location | chr:1,155840706 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1010033 | 1.00[CEU][hapmap] |
| rs1018730 | 0.89[ASW][hapmap];1.00[CEU][hapmap] |
| rs1055184 | 0.89[ASW][hapmap];1.00[CEU][hapmap] |
| rs1094558 | 0.89[EUR][1000 genomes] |
| rs12138833 | 1.00[CEU][hapmap] |
| rs12747344 | 1.00[CEU][hapmap] |
| rs1544119 | 1.00[CEU][hapmap] |
| rs1749409 | 0.89[ASW][hapmap];1.00[CEU][hapmap] |
| rs1765275 | 0.82[CEU][hapmap] |
| rs2275079 | 1.00[CEU][hapmap] |
| rs2275081 | 0.89[ASW][hapmap];1.00[CEU][hapmap] |
| rs2364404 | 1.00[CEU][hapmap] |
| rs35588936 | 0.88[CEU][hapmap] |
| rs3768280 | 0.82[ASW][hapmap];1.00[CEU][hapmap] |
| rs4661162 | 1.00[CEU][hapmap] |
| rs4661172 | 0.89[ASW][hapmap];1.00[CEU][hapmap] |
| rs493446 | 1.00[CEU][hapmap] |
| rs506688 | 0.82[ASW][hapmap];1.00[CEU][hapmap] |
| rs527113 | 0.89[ASW][hapmap];1.00[CEU][hapmap] |
| rs572609 | 0.82[ASW][hapmap];1.00[CEU][hapmap] |
| rs605025 | 1.00[CEU][hapmap] |
| rs6660802 | 0.89[ASW][hapmap];1.00[CEU][hapmap] |
| rs6667096 | 1.00[CEU][hapmap] |
| rs822503 | 1.00[CEU][hapmap] |
| rs822506 | 0.85[EUR][1000 genomes] |
| rs822507 | 0.92[EUR][1000 genomes] |
| rs822516 | 0.89[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SYT11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014