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rVarBase
SNP Report
Basic Infomation
Name
rs822516  
dbSNP
Location
chr:1,155842568
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1094462
1.00[GIH][hapmap]
rs2152051
0.81[YRI][hapmap]
rs552778
1.00[GIH][hapmap]
rs605472
0.81[YRI][hapmap]
rs621181
1.00[GIH][hapmap]
rs6687169
0.81[YRI][hapmap]
rs822019
1.00[GIH][hapmap]
rs822497
1.00[GIH][hapmap]
rs822507
0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs822519
0.89[CEU][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SYT11
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
NEU1
SCAN