SNP Report

Basic Infomation

Name	rs822497 dbSNP
Location	chr:1,155810293
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1094462	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11803678	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs13376235	1.00[EUR][1000 genomes]
rs1624846	0.80[EUR][1000 genomes]
rs16837037	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs16837063	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17370773	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1749415	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2363012	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2477541	0.80[EUR][1000 genomes]
rs2686255	0.80[EUR][1000 genomes]
rs4933	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4971064	1.00[EUR][1000 genomes]
rs4971065	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4971106	1.00[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs543854	0.91[AMR][1000 genomes]
rs552778	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes]
rs59706606	0.80[EUR][1000 genomes]
rs59791187	0.80[EUR][1000 genomes]
rs598176	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs621181	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes]
rs682020	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs73001021	0.80[EUR][1000 genomes]
rs7525057	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs7530726	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs822018	0.80[EUR][1000 genomes]
rs822019	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs822020	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs822022	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs822026	0.87[AMR][1000 genomes]
rs822477	0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs822482	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs822488	0.82[AMR][1000 genomes]
rs822495	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs822499	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs822500	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs822501	0.88[AFR][1000 genomes]
rs822516	1.00[GIH][hapmap]
rs822523	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000234937	Proximal transcriptional regulation
ENSG00000234937	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)