SNP Report
Basic Infomation
| Name | rs822523 dbSNP |
|---|---|
| Location | chr:1,155837118 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 37)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1094462 | 0.91[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs11803678 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs13376235 | 1.00[EUR][1000 genomes] |
| rs1624846 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs16837037 | 0.80[EUR][1000 genomes] |
| rs16837063 | 1.00[EUR][1000 genomes] |
| rs171167 | 0.82[AMR][1000 genomes] |
| rs17370773 | 0.97[EUR][1000 genomes] |
| rs1749415 | 1.00[EUR][1000 genomes] |
| rs2363012 | 1.00[EUR][1000 genomes] |
| rs2477541 | 0.80[EUR][1000 genomes] |
| rs2686255 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs348206 | 0.82[AMR][1000 genomes] |
| rs4971064 | 1.00[EUR][1000 genomes] |
| rs4971065 | 1.00[EUR][1000 genomes] |
| rs4971106 | 1.00[EUR][1000 genomes] |
| rs543854 | 0.96[AMR][1000 genomes] |
| rs548809 | 0.82[AMR][1000 genomes] |
| rs552778 | 0.96[AMR][1000 genomes] |
| rs59706606 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs59791187 | 0.80[EUR][1000 genomes] |
| rs621181 | 0.96[AMR][1000 genomes] |
| rs682020 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs73001021 | 0.80[EUR][1000 genomes] |
| rs7530726 | 1.00[EUR][1000 genomes] |
| rs822018 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs822019 | 0.96[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs822020 | 0.80[EUR][1000 genomes] |
| rs822022 | 0.82[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs822026 | 0.91[AMR][1000 genomes] |
| rs822482 | 1.00[EUR][1000 genomes] |
| rs822495 | 0.97[EUR][1000 genomes] |
| rs822497 | 0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs822499 | 1.00[EUR][1000 genomes] |
| rs822500 | 0.97[EUR][1000 genomes] |
| rs9426929 | 0.82[AMR][1000 genomes] |
| rs9427223 | 0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Distal transcriptional regulation |
| SYT11 | Distal transcriptional regulation |
| SYT11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014