SNP Report

Basic Infomation

Name	rs1749415 dbSNP
Location	chr:1,155825855
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 39)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1094462	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs11803678	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13376235	1.00[EUR][1000 genomes]
rs1624846	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs16837037	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs16837063	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17370773	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs2363012	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2477541	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2686255	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4253908	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4933	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4971064	1.00[EUR][1000 genomes]
rs4971065	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4971106	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs552778	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs59706606	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs59791187	0.80[EUR][1000 genomes]
rs598176	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap]
rs621181	0.85[CEU][hapmap];1.00[TSI][hapmap]
rs6684460	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs682020	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs708612	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73001021	0.80[EUR][1000 genomes]
rs7525057	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7530726	0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs822018	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs822019	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs822020	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs822022	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs822482	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs822488	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs822489	0.95[AFR][1000 genomes]
rs822495	1.00[CEU][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs822497	1.00[CEU][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs822499	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs822500	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs822523	1.00[EUR][1000 genomes]
rs9427221	0.88[ASW][hapmap]

rSNP related genes

Symbol	Regulation type
GON4L	Proximal transcriptional regulation
SYT11	Proximal transcriptional regulation
RIT1	Distal transcriptional regulation
GON4L	Distal transcriptional regulation
KIAA0907	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)