SNP Report
Basic Infomation
| Name | rs9427221 dbSNP |
|---|---|
| Location | chr:1,155670253 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10796952 | 0.81[AMR][1000 genomes] |
| rs11802649 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1749415 | 0.88[ASW][hapmap] |
| rs182979 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2666828 | 0.81[AMR][1000 genomes] |
| rs348188 | 0.81[AMR][1000 genomes] |
| rs348189 | 0.81[AMR][1000 genomes] |
| rs348190 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs348194 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs492669 | 0.81[AMR][1000 genomes] |
| rs4971058 | 0.88[ASW][hapmap];0.82[MKK][hapmap];0.81[AMR][1000 genomes] |
| rs607036 | 0.88[ASW][hapmap];0.83[MKK][hapmap];0.81[AMR][1000 genomes] |
| rs617232 | 0.88[ASW][hapmap];0.82[MKK][hapmap];0.81[AMR][1000 genomes] |
| rs670787 | 0.81[AMR][1000 genomes] |
| rs683121 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs822020 | 0.88[ASW][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MSTO2P | RNA binding protein mediated regulation |
| MSTO1 | RNA binding protein mediated regulation |
| DAP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014