SNP Report
Basic Infomation
| Name | rs12080245 dbSNP |
|---|---|
| Location | chr:1,155999357 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10158536 | 1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10752614 | 1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10796957 | 1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs10908487 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11264415 | 1.00[MEX][hapmap] |
| rs11264418 | 1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap] |
| rs12095373 | 1.00[MEX][hapmap] |
| rs12138913 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16837075 | 0.80[YRI][hapmap] |
| rs16837089 | 0.90[YRI][hapmap] |
| rs1804478 | 1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4661096 | 1.00[GIH][hapmap];1.00[TSI][hapmap] |
| rs6674865 | 1.00[MEX][hapmap] |
| rs6687169 | 1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| SSR2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014