SNP Report

Basic Infomation

Name	rs6674865 dbSNP
Location	chr:1,155822940
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11264415	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11264418	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12061759	1.00[AMR][1000 genomes]
rs12066633	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12075435	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12080245	1.00[MEX][hapmap]
rs12095373	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097744	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs16836999	1.00[YRI][hapmap]
rs16837068	0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs1804478	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs41409345	1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs6675202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6687169	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6692929	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs6702507	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74116434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7520381	1.00[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs7523409	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7530638	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7546314	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
DAP3	Distal transcriptional regulation
YY1AP1	Distal transcriptional regulation
GON4L	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)