SNP Report
Basic Infomation
| Name | rs16837068 dbSNP |
|---|---|
| Location | chr:1,155829478 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264415 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12061759 | 1.00[AMR][1000 genomes] |
| rs12066633 | 0.85[YRI][hapmap] |
| rs12075435 | 0.86[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12095373 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs12097744 | 0.85[YRI][hapmap] |
| rs16836999 | 0.87[YRI][hapmap] |
| rs41409345 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6674865 | 0.85[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6675202 | 1.00[AMR][1000 genomes] |
| rs6692929 | 0.91[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs6702507 | 1.00[AMR][1000 genomes] |
| rs74116434 | 1.00[AMR][1000 genomes] |
| rs7520381 | 0.85[YRI][hapmap] |
| rs7523409 | 0.80[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs7530638 | 1.00[AMR][1000 genomes] |
| rs7546314 | 0.85[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Proximal transcriptional regulation |
| SYT11 | Proximal transcriptional regulation |
| RIT1 | Distal transcriptional regulation |
| UBQLN4 | Distal transcriptional regulation |
| LAMTOR2 | Distal transcriptional regulation |
| PMF1-BGLAP | Distal transcriptional regulation |
| PMF1 | Distal transcriptional regulation |
| ENSG00000201614 | Distal transcriptional regulation |
| SYT11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014