SNP Report
Basic Infomation
| Name | rs12066633 dbSNP |
|---|---|
| Location | chr:1,155708344 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264415 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs11264418 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12075435 | 1.00[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs12095373 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs12097744 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16836999 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16837068 | 0.85[YRI][hapmap] |
| rs41409345 | 1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap] |
| rs6674865 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs6687169 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6692929 | 1.00[MEX][hapmap] |
| rs6702507 | 0.81[AFR][1000 genomes] |
| rs7520381 | 1.00[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7523409 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs7546314 | 1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DAP3 | Proximal transcriptional regulation |
| MSTO2P | RNA binding protein mediated regulation |
| MSTO1 | RNA binding protein mediated regulation |
| DAP3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014