SNP Report
Basic Infomation
| Name | rs11264418 dbSNP |
|---|---|
| Location | chr:1,155839931 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11264415 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12066633 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12080245 | 1.00[ASW][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap] |
| rs12095373 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs12097744 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs16837075 | 1.00[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs16837089 | 1.00[LWK][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1804478 | 1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap] |
| rs41409345 | 1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap] |
| rs6674865 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6687169 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs6692929 | 0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap] |
| rs7520381 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
| rs7546314 | 1.00[GIH][hapmap];1.00[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| GON4L | Distal transcriptional regulation |
| SYT11 | Distal transcriptional regulation |
| SYT11 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| FCRLA | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014