SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10158536	1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10752614	1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10796957	1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs10908487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264415	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs11264418	1.00[ASW][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs12080245	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12095373	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs12138913	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16837075	0.80[YRI][hapmap]
rs16837089	0.86[LWK][hapmap];0.90[YRI][hapmap]
rs4661096	1.00[TSI][hapmap]
rs6674865	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs6687169	1.00[GIH][hapmap];1.00[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
SSR2	Proximal transcriptional regulation
ENSG00000241471	Proximal transcriptional regulation
UBQLN4	Distal transcriptional regulation
LAMTOR2	Distal transcriptional regulation
SSR2	Distal transcriptional regulation
RAB25	Distal transcriptional regulation
SSR2	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 3)