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rVarBase
SNP Report
Basic Infomation
Name
rs4661096  
dbSNP
Location
chr:1,155999571
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10158536
1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10752614
1.00[GIH][hapmap];1.00[TSI][hapmap]
rs10796957
1.00[GIH][hapmap];1.00[TSI][hapmap]
rs12080245
1.00[GIH][hapmap];1.00[TSI][hapmap]
rs1804478
1.00[TSI][hapmap]
rSNP related genes
Symbol
Regulation type
UBQLN4
Distal transcriptional regulation
LAMTOR2
Distal transcriptional regulation
SSR2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
VLDLR
SCAN
HBG1
seeQTL
HBG2
seeQTL