SNP Report
Basic Infomation
| Name | rs6062559 dbSNP |
|---|---|
| Location | chr:20,62499663 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2236149 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2236150 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2236151 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2281535 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2281536 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3795149 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3795150 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3795151 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3795152 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4809244 | 0.85[CEU][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs4809249 | 0.85[CEU][hapmap] |
| rs4809373 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4809377 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4809378 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6011198 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062327 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6062328 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6062330 | 0.82[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs6062331 | 0.85[CEU][hapmap] |
| rs6062332 | 0.85[CEU][hapmap] |
| rs6062550 | 0.88[MEX][hapmap] |
| rs6062551 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6062552 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6062557 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6062560 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6062561 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6062562 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6062563 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6062564 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062565 | 1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6062566 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6062567 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6062582 | 0.85[CEU][hapmap] |
| rs6062584 | 0.82[CEU][hapmap] |
| rs6062587 | 0.85[CEU][hapmap];0.88[MEX][hapmap] |
| rs73151731 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73151741 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs73151751 | 0.82[AMR][1000 genomes] |
| rs73151756 | 0.82[AMR][1000 genomes] |
| rs7409760 | 0.82[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARFRP1 | Distal transcriptional regulation |
| SAMD10 | Distal transcriptional regulation |
| PRPF6 | Distal transcriptional regulation |
| ZGPAT | Distal transcriptional regulation |
| ENSG00000268858 | Distal transcriptional regulation |
| UCKL1 | Distal transcriptional regulation |
| ENSG00000270047 | RNA binding protein mediated regulation |
| TPD52L2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014