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rVarBase
SNP Report
Basic Infomation
Name
rs6062550  
dbSNP
Location
chr:20,62488635
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2236149
0.88[MEX][hapmap]
rs3795149
0.88[MEX][hapmap]
rs4809378
0.88[MEX][hapmap]
rs6011187
0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6011198
0.88[MEX][hapmap]
rs6062549
0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6062551
0.88[MEX][hapmap]
rs6062559
0.88[MEX][hapmap]
rs6062561
0.88[MEX][hapmap]
rs73149500
0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
ABHD16B
Proximal transcriptional regulation
ARFRP1
Distal transcriptional regulation
ZGPAT
Distal transcriptional regulation
ZBTB46
Distal transcriptional regulation
SLC2A4RG
Distal transcriptional regulation
MIR647
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)