SNP Report

Basic Infomation

Name	rs4809244 dbSNP
Location	chr:20,62530746
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 44)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2236149	0.85[CEU][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2236150	0.85[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2236151	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2281535	0.82[AMR][1000 genomes]
rs2281536	0.82[AMR][1000 genomes]
rs3795149	0.85[CEU][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs3795150	0.82[AMR][1000 genomes]
rs3795151	0.85[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3795152	0.82[AMR][1000 genomes]
rs4809249	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4809373	0.82[AMR][1000 genomes]
rs4809377	0.85[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4809378	0.85[CEU][hapmap];0.88[CHD][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4809382	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6011198	0.85[CEU][hapmap];0.92[CHD][hapmap];0.87[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs6011208	0.85[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6062330	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6062331	1.00[CEU][hapmap];0.92[CHB][hapmap];0.85[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6062332	1.00[CEU][hapmap];0.92[CHB][hapmap];0.87[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6062333	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062551	0.85[CEU][hapmap];0.88[MEX][hapmap]
rs6062552	0.82[AMR][1000 genomes]
rs6062559	0.85[CEU][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs6062560	0.82[AMR][1000 genomes]
rs6062561	0.85[CEU][hapmap];0.88[MEX][hapmap];0.82[AMR][1000 genomes]
rs6062562	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs6062564	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6062565	0.85[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6062566	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6062567	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6062573	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6062576	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062581	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062582	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6062583	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062584	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6062587	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062588	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73136572	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73151731	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs73151741	0.82[AMR][1000 genomes]
rs73151751	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73151756	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7409760	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
DNAJC5	Distal transcriptional regulation
DNAJC5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)