SNP Report
Basic Infomation
| Name | rs6062573 dbSNP |
|---|---|
| Location | chr:20,62530955 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs4809244 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4809249 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4809382 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6011208 | 0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6062330 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6062331 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6062332 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6062333 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6062576 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6062581 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6062582 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6062583 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6062584 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6062587 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6062588 | 0.93[EUR][1000 genomes] |
| rs73136572 | 0.93[EUR][1000 genomes] |
| rs73151751 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs73151756 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs7409760 | 0.83[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| DNAJC5 | Distal transcriptional regulation |
| DNAJC5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014