SNP Report
Basic Infomation
| Name | rs6062582 dbSNP |
|---|---|
| Location | chr:20,62547077 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2236149 | 0.85[CEU][hapmap] |
| rs2236150 | 0.85[CEU][hapmap] |
| rs3795149 | 0.85[CEU][hapmap] |
| rs3795151 | 0.85[CEU][hapmap] |
| rs4809244 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4809249 | 1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4809377 | 0.85[CEU][hapmap] |
| rs4809378 | 0.85[CEU][hapmap] |
| rs4809382 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4809383 | 0.84[ASN][1000 genomes] |
| rs4809384 | 0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs6011198 | 0.85[CEU][hapmap] |
| rs6062330 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6062331 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6062332 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6062333 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6062551 | 0.85[CEU][hapmap] |
| rs6062559 | 0.85[CEU][hapmap] |
| rs6062561 | 0.85[CEU][hapmap] |
| rs6062562 | 0.82[CEU][hapmap] |
| rs6062565 | 0.85[CEU][hapmap] |
| rs6062573 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6062576 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6062581 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6062583 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6062584 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6062587 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6062588 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73136572 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs73151751 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs73151756 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7409760 | 0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs817370 | 0.87[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MIR941-1 | Proximal transcriptional regulation |
| MIR941-2 | Proximal transcriptional regulation |
| MIR941-3 | Proximal transcriptional regulation |
| ENSG00000199805 | Distal transcriptional regulation |
| DNAJC5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014