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rVarBase
SNP Report
Basic Infomation
Name
rs4809384  
dbSNP
Location
chr:20,62556254
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 13)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs4809249
0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4809382
0.93[ASN][1000 genomes]
rs6062333
0.93[ASN][1000 genomes]
rs6062576
0.91[ASN][1000 genomes]
rs6062581
0.93[ASN][1000 genomes]
rs6062582
0.90[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6062583
0.93[ASN][1000 genomes]
rs6062584
0.93[ASN][1000 genomes]
rs6062587
0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6062588
0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73136572
0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7409760
0.93[ASN][1000 genomes]
rs817370
0.89[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
DNAJC5
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)