SNP Report

Basic Infomation

Name	rs7409760 dbSNP
Location	chr:20,62548593
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 32)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs2236149	0.82[CEU][hapmap]
rs2236150	0.82[CEU][hapmap]
rs3795149	0.82[CEU][hapmap]
rs3795151	0.82[CEU][hapmap]
rs4809244	0.82[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4809249	0.82[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4809377	0.82[CEU][hapmap]
rs4809378	0.82[CEU][hapmap]
rs4809382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4809383	0.84[ASN][1000 genomes]
rs4809384	0.93[ASN][1000 genomes]
rs6011198	0.82[CEU][hapmap]
rs6011208	0.81[AMR][1000 genomes]
rs6062330	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062331	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062332	0.82[CEU][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062333	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6062551	0.82[CEU][hapmap]
rs6062559	0.82[CEU][hapmap]
rs6062561	0.82[CEU][hapmap]
rs6062565	0.82[CEU][hapmap]
rs6062573	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6062576	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6062581	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6062582	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6062583	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6062584	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6062587	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6062588	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73136572	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73151751	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73151756	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
MIR941-1	Proximal transcriptional regulation
MIR941-2	Proximal transcriptional regulation
MIR941-3	Proximal transcriptional regulation
ENSG00000199805	Distal transcriptional regulation
UCKL1	Distal transcriptional regulation
DNAJC5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)