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rVarBase
SNP Report
Basic Infomation
Name
rs817370  
dbSNP
Location
chr:20,62573064
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs4809249
0.89[JPT][hapmap]
rs4809384
0.89[JPT][hapmap]
rs6062582
0.87[JPT][hapmap]
rs6062587
0.89[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
UCKL1
Proximal transcriptional regulation
MIR1914
Proximal transcriptional regulation
U2AF1
Distal transcriptional regulation
DNAJC5
Distal transcriptional regulation
UCKL1
Distal transcriptional regulation
UCKL1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
eQTL related gene
Source
COL9A3
SCAN
TPD52L2
SCAN
PRIC285
SCAN